VC_1267 protein (Vibrio cholerae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VC_1267

Hypothetical protein; Identified by Glimmer2; putative. (360 aa)

Predicted Functional Partners:

VC_1265

0.977

VC_1266

0.976

VC_1264

0.884

VC_A0075

0.564

VC_A0260

0.530

VC_1933

0.524

VC_0608

0.512

VC_1268

0.492

VC_A0233

0.487

VC_0609

0.412

Your Current Organism:

Vibrio cholerae

NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
VC_0608	VC_0609	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	0.986
VC_0608	VC_1264	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	0.875
VC_0608	VC_1265	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.688
VC_0608	VC_1266	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.491
VC_0608	VC_1267	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.512
VC_0609	VC_0608	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	0.986
VC_0609	VC_1264	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	0.500
VC_0609	VC_1265	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.548
VC_0609	VC_1267	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.412
VC_1264	VC_0608	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	0.875
VC_1264	VC_0609	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	0.500
VC_1264	VC_1265	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.967
VC_1264	VC_1266	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.967
VC_1264	VC_1267	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.884
VC_1264	VC_1933	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.425
VC_1264	VC_A0075	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.463
VC_1264	VC_A0260	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.481
VC_1265	VC_0608	Hypothetical protein; Identified by Glimmer2; putative.	iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.	0.688
VC_1265	VC_0609	Hypothetical protein; Identified by Glimmer2; putative.	iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.	0.548
VC_1265	VC_1264	Hypothetical protein; Identified by Glimmer2; putative.	Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.	0.967

page 1 of 3

Server load: medium (52%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About