STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1268Conserved hypothetical protein; Identified by Glimmer2; putative. (524 aa)    
Predicted Functional Partners:
VC_1269
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.926
VC_A0058
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.707
VC_1537
Lipoprotein NlpC; Similar to GB:M14031 SP:P23898 PID:145446 GB:U00096 PID:1742788; identified by sequence similarity; putative.
  
   
 0.593
VC_1266
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
VC_0843
tagE protein; Similar to GB:U07173 PID:460955 PID:1100877; identified by sequence similarity; putative.
      
 0.491
VC_A1043
tagE protein; Similar to GB:AE000511 PID:2314724; identified by sequence similarity; putative.
      
 0.491
VC_1265
Hypothetical protein; Identified by Glimmer2; putative.
       0.487
VC_A0164
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.461
VC_1270
Glyoxylase II family protein; Similar to GB:U00096 SP:P75849 PID:1787158; identified by sequence similarity; putative.
       0.451
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.