STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1274Conserved hypothetical protein; Identified by Glimmer2; putative. (177 aa)    
Predicted Functional Partners:
VC_1275
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.980
VC_1273
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.941
siaQ
Conserved hypothetical protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system SiaPQM that catalyzes unidirectional Na(+)-dependent sialic acid uptake.
  
  
  0.918
dctQ
C4-dicarboxylate transport protein DctQ, putative; Part of the tripartite ATP-independent periplasmic (TRAP) transport system DctPQM involved in C4-dicarboxylates uptake.
   
 
  0.902
VC_0488
Extracellular solute-binding protein, putative; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.801
VC_1276
Sensor histidine kinase; Similar to GB:M23558 SP:P13799 GB:M23649 PID:143088 PID:143498; identified by sequence similarity; putative.
       0.732
VC_1277
Transcriptional regulator, LuxR family; Similar to GB:M21658 SP:P13800 GB:M23649 PID:143089 PID:143499; identified by sequence similarity; putative.
       0.732
VC_1272
Hypothetical protein; Identified by Glimmer2; putative.
       0.434
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.