STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
Experiments
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[Homology]
Score
VC_1285Conserved hypothetical protein; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides. (252 aa)    
Predicted Functional Partners:
VC_1284
6-phospho-beta-glucosidase; Similar to SP:P46320 PID:895751 PID:1783269 GB:AL009126; identified by sequence similarity; putative.
 
  
 0.956
VC_1283
PTS system, cellobiose-specific IIA component; Similar to SP:P17335 PID:145480 PID:145486 PID:145488 PID:145490; identified by sequence similarity; putative.
 
   
 0.917
VC_1282
PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
   
 0.890
VC_1281
PTS system, cellobiose-specific IIB component; Similar to GB:AL009126; identified by sequence similarity; putative.
 
   
 0.807
VC_1286
Transcriptional regulator, LacI family; Similar to PID:882607 GB:U00096 PID:1789068; identified by sequence similarity; putative.
       0.588
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
    
   0.473
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.440
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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