STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1301Serine transporter; Similar to SP:P36559 GB:U01233 PID:402256 PID:882691 GB:U00096; identified by sequence similarity; putative. (417 aa)    
Predicted Functional Partners:
VC_1300
L-serine dehydratase 1; Similar to GB:M28695 SP:P16095 PID:290464 GB:U00096 PID:1736451; identified by sequence similarity; putative; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.780
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.774
VC_1302
MutT/nudix family protein; Similar to SP:P43337 GB:U00096 PID:1788115; identified by sequence similarity; putative.
    
 0.631
sstT
Sodium/dicarboxylate symporter; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
   
  
 0.606
VC_A0666
L-serine dehydratase 1; Similar to GB:M28695 SP:P16095 PID:290464 GB:U00096 PID:1736451; identified by sequence similarity; putative; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.533
VC_1386
Heat shock protein 70 family protein; Similar to SP:P36928 GB:U00096 PID:1788384; identified by sequence similarity; putative.
  
 
  0.527
VC_A0160
Tryptophan-specific transport protein; Similar to GB:L42023 SP:P44614 PID:1003469 PID:1222213 PID:1204542; identified by sequence similarity; putative.
  
   
 0.511
VC_2356
Sodium/alanine symporter; Similar to SP:P30143 GB:U00096 PID:1786188; identified by sequence similarity; putative.
   
  
 0.490
VC_1422
Sodium/alanine symporter; Similar to GB:L42023 SP:P44917 PID:1005967 PID:1220986 PID:1205130; identified by sequence similarity; putative.
   
  
 0.489
VC_A0772
Tyrosine-specific transport protein; Similar to GB:M23240 SP:P18199 PID:148089 GB:U00096 PID:1736569; identified by sequence similarity; putative.
  
     0.486
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.