STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1314Transporter, putative; Similar to GB:AE000657; identified by sequence similarity; putative. (487 aa)    
Predicted Functional Partners:
VC_1315
Sensor histidine kinase; Similar to SP:P26489 GB:X56658 GB:X59071 PID:38703 PID:38705; identified by sequence similarity; putative.
 
     0.894
VC_1316
Chemotaxis protein CheY, putative; Similar to GB:X61231 PID:45323 SP:Q51455; identified by sequence similarity; putative.
 
     0.862
VC_A1013
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.510
VC_A1012
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.486
VC_A0157
NADH dehydrogenase, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
     
 0.458
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
 
    0.448
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
      0.447
VC_0064
thiS protein; Similar to PID:1469147; identified by sequence similarity; putative.
 
     0.431
pta
Phosphate acetyltransferase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.430
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
      0.405
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.