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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1322Conserved hypothetical protein; Identified by Glimmer2; putative. (71 aa)    
Predicted Functional Partners:
VC_1323
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_2444
General secretion pathway protein B, putative; Similar to GB:X81473 SP:P45755 PID:551217; identified by sequence similarity; putative.
  
     0.698
VC_2098
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.629
VC_0115
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.626
VC_1885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.618
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.604
VC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.588
epsH
General secretion pathway protein H; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane.
  
     0.572
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.567
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.