Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1328Galactoside ABC transporter, permease protein; Similar to GB:M59444 SP:P23200 PID:146855 GB:U00096 PID:1788471; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. (337 aa)    
Predicted Functional Partners:
mglA
Galactoside ABC transporter, ATP-binding protein; Part of the ABC transporter complex MglABC involved in galactose/methyl galactoside import. Responsible for energy coupling to the transport system.
 
 0.993
VC_1325
Galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein; Similar to SP:P23905 GB:X52093; identified by sequence similarity; putative.
 
 
 0.970
VC_A0130
Ribose ABC transporter, periplasmic D-ribose-binding protein; Similar to GB:L42023 SP:P44737 PID:1003892 PID:1222436 PID:1204755; identified by sequence similarity; putative.
  
 0.875
rbsA
Ribose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.864
rbsD
Ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
   
 0.685
VC_1326
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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