Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1341Acetyltransferase, putative; Similar to PID:1550710 GB:AL123456; identified by sequence similarity; putative. (158 aa)    
Predicted Functional Partners:
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
 
     0.787
VC_1340
prpE protein; Similar to GB:U00096 SP:P77495 PID:1657531 PID:1786529; identified by sequence similarity; putative.
     
 0.716
VC_1339
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.710
VC_1338
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.708
VC_1337
Methylcitrate synthase; Similar to GB:U00096 PID:1657529 PID:1786527; identified by sequence similarity; putative; Belongs to the citrate synthase family.
     
 0.645
VC_A0319
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0482
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.599
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.595
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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