STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1341Acetyltransferase, putative; Similar to PID:1550710 GB:AL123456; identified by sequence similarity; putative. (158 aa)    
Predicted Functional Partners:
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
 
     0.787
argA
N-acetylglutamate synthase; Similar to SP:P08205 GB:Y00492 PID:581038 PID:882710 GB:U00096; identified by sequence similarity; putative.
    
 0.729
VC_A0319
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.711
VC_A0482
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.711
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.711
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
    
   0.664
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.602
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.597
VC_0861
Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative.
  
     0.589
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.569
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.