STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1346Conserved hypothetical protein; Identified by Glimmer2; putative. (339 aa)    
Predicted Functional Partners:
VC_1345
Oxidoreductase, putative; Similar to SP:Q00667 PID:984327; identified by sequence similarity; putative.
 
  
 0.988
maiA
Glutathione S-transferase, putative; Similar to PID:2183249; identified by sequence similarity; putative; Belongs to the GST superfamily. Zeta family.
 
 
 0.987
VC_1344
4-hydroxyphenylpyruvate dioxygenase; Similar to PID:2108220; identified by sequence similarity; putative.
 
  
 0.985
VC_1198
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.797
VC_A0985
Oxidoreductase/iron-sulfur cluster-binding protein; Similar to GB:AE000511 PID:2314381; identified by sequence similarity; putative.
    
 0.797
VC_A0496
Glutathione S-transferase, putative; Similar to SP:P28342 PID:167968 PID:18330; identified by sequence similarity; putative.
 
 
 0.773
phhA
Phenylalanine-4-hydroxylase; Similar to GB:M88627 SP:P43334 PID:476741; identified by sequence similarity; putative.
 
  
 0.772
VC_1304
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.760
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.680
VC_2089
Succinate dehydrogenase, flavoprotein subunit; Similar to GB:J01619 SP:P10444 GB:X00980 PID:146199 PID:42925; identified by sequence similarity; putative; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.669
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.