STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1356Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system. (109 aa)    
Predicted Functional Partners:
tusD
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrE/TusD family.
 
 
 0.949
tusC
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrF/TusC family.
 
  
 0.831
VC_0358
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.788
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.765
VC_1358
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.591
VC_1890
NADH dehydrogenase; Similar to SP:P00393 PID:581140 GB:U00096 PID:1651546 PID:1787352; identified by sequence similarity; putative.
    
 0.578
VC_A0644
NADH oxidase, putative; Similar to GB:AE000782; identified by sequence similarity; putative.
 
  
 0.543
VC_1198
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.519
VC_A0985
Oxidoreductase/iron-sulfur cluster-binding protein; Similar to GB:AE000511 PID:2314381; identified by sequence similarity; putative.
   
 
 0.519
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
  
    0.412
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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