STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1356Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system. (109 aa)    
Predicted Functional Partners:
tusD
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrE/TusD family.
 
 
 0.993
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.964
tusC
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrF/TusC family.
 
  
 0.871
VC_0358
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.836
VC_1358
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.766
VC_1359
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897; identified by sequence similarity; putative.
       0.628
VC_1360
Amino acid ABC transporter, permease protein; Similar to SP:P45768 PID:606211 GB:U00096 PID:1789671; identified by sequence similarity; putative.
       0.619
VC_1361
Amino acid ABC transporter, permease protein; Similar to PID:1154895; identified by sequence similarity; putative.
       0.619
VC_1362
Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to PID:1154894; identified by sequence similarity; putative.
       0.583
tusA
Conserved hypothetical protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
   
 0.445
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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