Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1358Conserved hypothetical protein; Identified by Glimmer2; putative. (223 aa)    
Predicted Functional Partners:
VC_1356
Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system.
     
 0.766
msrAB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity).
  
   0.712
htpX
Heat shock protein HtpX; Similar to GB:M58470 SP:P23894 PID:146412 GB:U00096 PID:1736470; identified by sequence similarity; putative; Belongs to the peptidase M48B family.
  
  
 0.696
VC_1359
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897; identified by sequence similarity; putative.
       0.692
VC_1360
Amino acid ABC transporter, permease protein; Similar to SP:P45768 PID:606211 GB:U00096 PID:1789671; identified by sequence similarity; putative.
       0.676
VC_1361
Amino acid ABC transporter, permease protein; Similar to PID:1154895; identified by sequence similarity; putative.
       0.676
VC_1362
Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to PID:1154894; identified by sequence similarity; putative.
       0.616
hflK
hflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.604
VC_0186
Glutathione reductase; Similar to SP:P06715 GB:M13141 PID:146248 PID:466637 GB:U00096; identified by sequence similarity; putative.
  
   0.568
VC_1964
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.477
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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