STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1358Conserved hypothetical protein; Identified by Glimmer2; putative. (223 aa)    
Predicted Functional Partners:
msrAB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity).
  
   0.764
htpX
Heat shock protein HtpX; Similar to GB:M58470 SP:P23894 PID:146412 GB:U00096 PID:1736470; identified by sequence similarity; putative; Belongs to the peptidase M48B family.
  
  
 0.639
VC_1356
Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system.
     
 0.591
VC_1003
Bacteriocin production protein; Similar to GB:J01666 SP:P08550 PID:146367 PID:147415 GB:U00096; identified by sequence similarity; putative.
  
    0.519
VC_1359
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897; identified by sequence similarity; putative.
       0.493
VC_1360
Amino acid ABC transporter, permease protein; Similar to SP:P45768 PID:606211 GB:U00096 PID:1789671; identified by sequence similarity; putative.
       0.467
VC_1361
Amino acid ABC transporter, permease protein; Similar to PID:1154895; identified by sequence similarity; putative.
       0.467
VC_1236
PilB-related protein; Similar to SP:P39903 GB:U00096 PID:1742896 PID:1788077; identified by sequence similarity; putative.
  
   0.461
msrB
PilB-related protein; Similar to SP:P39903 GB:U00096 PID:1742896 PID:1788077; identified by sequence similarity; putative; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.461
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
  
 0.452
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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