Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1362Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to PID:1154894; identified by sequence similarity; putative. (342 aa)    
Predicted Functional Partners:
VC_1360
Amino acid ABC transporter, permease protein; Similar to SP:P45768 PID:606211 GB:U00096 PID:1789671; identified by sequence similarity; putative.
 
 0.990
VC_1359
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897; identified by sequence similarity; putative.
 
 0.987
VC_1361
Amino acid ABC transporter, permease protein; Similar to PID:1154895; identified by sequence similarity; putative.
 
 
 0.987
VC_A1037
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1051225 PID:1655715; identified by sequence similarity; putative.
 
 
 0.669
VC_1358
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.616
VC_1356
Sulfite reductase, gamma subunit-related protein; Part of a sulfur-relay system.
       0.583
VC_1256
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
   0.522
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
    
   0.462
VC_A1040
Amino acid ABC transporter, permease protein; Similar to GB:AE000782; identified by sequence similarity; putative.
 
 
 0.437
VC_A1038
Amino acid ABC transporter, permease protein; Similar to GB:AE000782; identified by sequence similarity; putative.
 
 
 0.428
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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