STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1380Hypothetical protein; Identified by Glimmer2; putative. (116 aa)    
Predicted Functional Partners:
VC_1379
Hypothetical protein; Identified by Glimmer2; putative.
       0.671
VC_1381
Hypothetical protein; Identified by Glimmer2; putative.
       0.664
VC_1382
ATP-dependent helicase HrpA; Similar to SP:P43329 PID:806328 GB:U00096 PID:1742299 PID:1742304; identified by sequence similarity; putative.
       0.557
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.457
VC_2232
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.457
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.456
VC_0632
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Similar to GB:L42023 SP:P45161 PID:1007328 PID:1221461 PID:1205568; identified by sequence similarity; putative.
      
 0.432
VC_1384
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.