Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_1393sugE protein; Similar to SP:P20928 GB:X06151 PID:45911; identified by sequence similarity; putative. (104 aa)    
Predicted Functional Partners:
VC_1405
Methyl-accepting chemotaxis protein; Similar to GB:X61367 PID:48195; identified by sequence similarity; putative.
      
 0.618
VC_2195
Flagellar basal-body rod protein FlgG; Similar to GB:U00096 SP:P75939 PID:1787318; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.508
cry2
Deoxyribodipyrimidine photolyase, putative; Has no photolyase activity.
       0.479
epmA
lysyl-tRNA synthetase-related protein; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily.
   
  
 0.467
VC_A0881
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.463
VC_0926
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.442
VC_0932
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.442
VC_0245
rfbG protein; Similar to GB:X59554 PID:48387; identified by sequence similarity; putative.
      
 0.425
VC_0249
rfbL protein; Similar to GB:X59554 PID:48391; identified by sequence similarity; putative.
      
 0.425
VC_0250
Iron-containing alcohol dehydrogenase family protein RfbM; Similar to GB:M26941 SP:P13604 PID:144714; identified by sequence similarity; putative.
      
 0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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