STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1396Hypothetical protein; Identified by Glimmer2; putative. (86 aa)    
Predicted Functional Partners:
VC_1400
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.951
VC_1403
Methyl-accepting chemotaxis protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.925
VC_1402
Purine-binding chemotaxis protein Chew, putative; Similar to GB:AE000782; identified by sequence similarity; putative.
 
     0.921
cheR2
Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
     0.861
VC_1398
Chemotaxis protein CheY; Similar to PID:2292999; identified by sequence similarity; putative.
 
     0.860
cheB3
Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.
 
     0.836
VC_1397
Chemotaxis protein CheA; Similar to PID:940147 SP:Q56310 GB:AE000512; identified by sequence similarity; putative.
       0.786
VC_1394
Methyl-accepting chemotaxis protein; Similar to GB:AE000511 PID:2313186; identified by sequence similarity; putative.
       0.457
VC_1404
Hypothetical protein; Identified by Glimmer2; putative.
       0.449
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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