STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1410Multidrug resistance protein VceA; Similar to GP:3378278; identified by sequence similarity; putative. (406 aa)    
Predicted Functional Partners:
VC_1409
Multidrug resistance protein, putative; Similar to GP:3378279; identified by sequence similarity; putative.
 
 
 0.994
VC_1411
Multidrug resistance protein VceB; Similar to GP:2815578; identified by sequence similarity; putative; Belongs to the major facilitator superfamily.
 
 
 0.993
tolC
Outer membrane protein TolC; Outer membrane channel, which is required for the function of several efflux systems (By similarity). Required to export RtxA cytotoxin; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.886
VC_1391
Multidrug transporter, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
 
 
 0.878
VC_1565
Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.
  
 
 0.870
VC_1597
Multidrug transporter, putative; Similar to PID:1217600; identified by sequence similarity; putative.
 
 
 0.869
VC_1621
Agglutination protein; Similar to GB:M64540 PID:150976; identified by sequence similarity; putative.
  
 
 0.806
VC_1606
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.805
VC_1408
Transcriptional regulator, TetR family; Similar to GB:M97208 SP:P32398 PID:143046 PID:2226233 GB:AL009126; identified by sequence similarity; putative.
 
   
 0.776
VC_1261
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.771
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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