Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1444Hypothetical protein; Identified by Glimmer2; putative. (405 aa)    
Predicted Functional Partners:
VC_1445
Sensor histidine kinase/response regulator; Similar to PID:1653075; identified by sequence similarity; putative.
  
    0.808
VC_1443
Hypothetical protein; Identified by Glimmer2; putative.
       0.761
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.586
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
 
    0.542
VC_0393
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.483
VC_A1086
Response regulator; Similar to PID:1653310; identified by sequence similarity; putative.
  
  
 0.480
VC_0622
Sensory box sensor histidine kinase/response regulator; Similar to PID:939724; identified by sequence similarity; putative.
  
    0.479
VC_A0573
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.478
VC_0972
Porin, putative; Similar to SP:P24305; identified by sequence similarity; putative.
  
    0.469
VC_1854
Porin, putative; Similar to GP:3377759; identified by sequence similarity; putative.
  
    0.469
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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