STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1448RTX toxin transporter; Similar to GP:4455067; identified by sequence similarity; putative. (720 aa)    
Predicted Functional Partners:
VC_1447
RTX toxin transporter; Similar to GP:4455068; identified by sequence similarity; putative.
 0.997
VC_A1080
Secretion protein, HlyD family; Similar to GP:1314576; identified by sequence similarity; putative.
 0.953
viuB
Vibriobactin utilization protein ViuB; Involved in intracellular removal of iron from iron- vibriobactin complex. Vibriobactin is an iron-chelating compound involved in the transport of iron from the bacterial environment into the cell cytoplasm (By similarity); Belongs to the SIP oxidoreductase family.
   
  0.906
msbA
Transport ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Belongs to the ABC transporter superfamily. Lipid exporter (TC 3.A.1.106) family.
 
 
0.883
VC_1446
Toxin secretion transporter, putative; Similar to SP:P16532 GB:M24197 PID:150495 PID:150514; identified by sequence similarity; putative.
 
  
 
0.881
VC_1499
ABC transporter, ATP-binding protein; Similar to SP:P45861 PID:853754 GB:AL009126; identified by sequence similarity; putative.
 
 
0.876
VC_0199
Hemolysin secretion ATP-binding protein, putative; Similar to GB:L42023 PID:1006302 PID:1221167 PID:1205301 SP:Q57180; identified by sequence similarity; putative.
   
0.863
VC_A0996
ABC transporter, ATP-binding protein; Similar to GB:L42023 PID:1006302 PID:1221167 PID:1205301 SP:Q57180; identified by sequence similarity; putative.
   
0.863
VC_1410
Multidrug resistance protein VceA; Similar to GP:3378278; identified by sequence similarity; putative.
  
 0.850
VC_1607
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.850
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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