Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1505Hypothetical protein; Identified by Glimmer2; putative. (286 aa)    
Predicted Functional Partners:
VC_1504
Hypothetical protein; Identified by Glimmer2; putative.
      0.974
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.767
VC_0904
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.697
VC_A0592
MutT/nudix family protein; Similar to SP:P46351; identified by sequence similarity; putative.
  
     0.640
VC_1503
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CvfB family.
       0.624
VC_0404
MSHA biogenesis protein MshN; Similar to PID:791156 PID:791158; identified by sequence similarity; putative.
  
     0.604
exbD1
TonB system transport protein ExbD1; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
  
     0.600
VC_1543
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.567
VC_2098
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.567
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.565
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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