STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1515Chaperone, formate dehydrogenase-specific, putative; Similar to GP:3327032; identified by sequence similarity; putative. (218 aa)    
Predicted Functional Partners:
VC_1516
Iron-sulfur cluster-binding protein; Similar to GB:X61204 PID:44800 PID:1747410; identified by sequence similarity; putative.
 
  
 0.983
fdhD
Formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.918
VC_1511
Formate dehydrogenase, cytochrome B556 subunit; Similar to GB:AE000657; identified by sequence similarity; putative.
 
  
 0.913
VC_1512
Formate dehydrogenase, iron-sulfur subunit; Similar to SP:P27273 PID:48508; identified by sequence similarity; putative.
 
  
 0.891
VC_1514
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.855
VC_1524
ABC transporter, permease protein; Similar to GB:AE000666; identified by sequence similarity; putative.
 
    0.781
VC_1523
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.779
VC_1518
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.690
VC_1517
Hypothetical protein; Identified by Glimmer2; putative.
       0.683
VC_1521
Sensor histidine kinase; Similar to GB:L13078 SP:Q06067 PID:290419 GB:U00096 PID:1736874; identified by sequence similarity; putative.
  
     0.657
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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