STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1516Iron-sulfur cluster-binding protein; Similar to GB:X61204 PID:44800 PID:1747410; identified by sequence similarity; putative. (553 aa)    
Predicted Functional Partners:
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
  
 
 0.999
VC_2656
Fumarate reductase, flavoprotein subunit; Similar to GB:U14003 SP:P00363 GB:J01611 PID:145263 PID:536998; identified by sequence similarity; putative.
  
 0.990
VC_2089
Succinate dehydrogenase, flavoprotein subunit; Similar to GB:J01619 SP:P10444 GB:X00980 PID:146199 PID:42925; identified by sequence similarity; putative; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.988
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.975
VC_1141
Isocitrate dehydrogenase; Similar to PID:1030696; identified by sequence similarity; putative; Belongs to the monomeric-type IDH family.
  
 
 0.975
VC_1515
Chaperone, formate dehydrogenase-specific, putative; Similar to GP:3327032; identified by sequence similarity; putative.
 
  
 0.972
VC_1512
Formate dehydrogenase, iron-sulfur subunit; Similar to SP:P27273 PID:48508; identified by sequence similarity; putative.
 
 
 0.970
VC_1993
2,4-dienoyl-CoA reductase; Similar to SP:P42593 PID:606019 GB:U00096 PID:1789463; identified by sequence similarity; putative.
  
 0.950
VC_2374
Glutamate synthase, small subunit; Similar to GB:AL123456; identified by sequence similarity; putative.
  
 0.948
VC_2377
Glutamate synthase, small subunit; Similar to PID:606152 GB:U00096 PID:1789606; identified by sequence similarity; putative.
  
 0.948
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.