Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1534Conserved hypothetical protein; Identified by Glimmer2; putative. (304 aa)    
Predicted Functional Partners:
VC_1533
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.760
VC_0963
VisC-related protein; Similar to GB:U00096 PID:1778581 PID:1786883; identified by sequence similarity; putative.
   
 
 0.683
VC_1945
FAD monooxygenase, PheA/TfdB family; Similar to SP:P15245 PID:170525; identified by sequence similarity; putative.
   
 
 0.683
VC_2474
visC protein; Similar to GB:D90281 SP:P25535 PID:216629 PID:882436 GB:U00096; identified by sequence similarity; putative.
   
 
 0.683
VC_2475
ubiH protein; Similar to GB:D90281 SP:P25534 PID:216628 PID:882437 GB:U00096; identified by sequence similarity; putative.
   
 
 0.683
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.674
nagK
ROK family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
       0.659
VC_1723
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.636
purD
Phosphoribosylamine--glycine ligase; Similar to SP:P15640 GB:J05126 GB:X51950 PID:147421 PID:396344; identified by sequence similarity; putative.
    
   0.609
apaH
Bis(5`-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
   0.592
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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