Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_1541Hypothetical protein; Identified by Glimmer2; putative. (327 aa)    
Predicted Functional Partners:
norM
Multidrug resistance protein NorM, putative; Multidrug efflux pump that functions as a Na(+)/drug antiporter. Confers resistance to norfloxacin, ciprofloxacin, ofloxacin, daunomycin, doxorubicin, streptomycin, kanamycin, ethidium bromide and acriflavine; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
       0.701
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.690
VC_A1021
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.609
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.595
VC_2206
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.589
VC_0399
MSHA biogenesis protein MshI; Similar to PID:791156 PID:791153; identified by sequence similarity; putative.
  
     0.572
VC_0353
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
VC_2691
Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative.
  
     0.555
VC_A0561
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.553
VC_2207
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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