STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1555Conserved hypothetical protein; Identified by Glimmer2; putative. (170 aa)    
Predicted Functional Partners:
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.933
VC_1556
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.781
VC_0993
N-acetylglucosamine repressor; Similar to GP:2541902; identified by sequence similarity; putative.
 
 
 0.524
VC_1557
Transcriptional regulator, LacI family; Similar to PID:882607 GB:U00096 PID:1789068; identified by sequence similarity; putative.
       0.490
VC_0270
ROK family protein; Similar to SP:P23917 GB:X76979 PID:145329 PID:581151 GB:U00096; identified by sequence similarity; putative.
  
 
 0.454
nagK
ROK family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
  
 
 0.454
nanK
ROK family protein; Catalyzes the phosphorylation of N-acetylmannosamine (ManNAc) to ManNAc-6-P; Belongs to the ROK (NagC/XylR) family. NanK subfamily.
  
 
 0.454
VC_2007
Transcriptional regulator, ROK family; Similar to PID:971264 SP:P50456 GB:U00096 PID:1549225 PID:1742617; identified by sequence similarity; putative.
  
 
 0.433
VC_1558
6-phospho-beta-glucosidase; Similar to PID:887851 GB:U00096 SP:Q46829 PID:2367174; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 1 family.
       0.427
VC_0586
Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
   
    0.410
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.