STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1561Transcriptional regulator, LysR family; Similar to SP:P10183 PID:150233; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
VC_1562
Beta-lactamase-related protein; Similar to GB:M19530 SP:P04190 SP:P14488 PID:143128; identified by sequence similarity; putative.
  
  
 0.769
VC_1947
Transcriptional regulator, LysR family; Similar to GB:L42023 SP:P43011 PID:1007393 PID:1221499 PID:1139588; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.673
VC_1390
Transcriptional regulator, LysR family; Similar to PID:1493807; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.668
VC_1049
Transcriptional regulator, LysR family; Similar to GP:1139588; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.664
VC_1588
Transcriptional regulator, LysR family; Similar to PID:727227 SP:P52666; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.662
VC_A1058
Transcriptional regulator, LysR family; Similar to PID:1493807; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.662
VC_A0991
Transcriptional regulator, LysR family; Similar to PID:1652912; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.652
VC_A0635
Transcriptional regulator, LysR family; Similar to GB:U00096 PID:1788100; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.635
VC_1563
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.631
VC_1568
ABC transporter, ATP-binding protein; Similar to GB:AL009126; identified by sequence similarity; putative.
     
 0.628
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.