STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1578Hypothetical protein; Identified by Glimmer2; putative. (78 aa)    
Predicted Functional Partners:
VC_1579
Enterobactin synthetase component F-related protein; Similar to GB:M60177 SP:P11454 GB:M17354 PID:145843 PID:551801; identified by sequence similarity; putative.
     
 0.908
VC_1577
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.891
VC_1580
Transcriptional regulator, LysR family; Similar to GB:X66866 PID:403331 SP:P52692; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.588
VC_1576
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0267 family.
       0.473
VC_1581
NADH dehydrogenase, putative; Similar to SP:P33607 PID:397909 GB:U00096 PID:1788614 PID:1799638; identified by sequence similarity; putative.
       0.430
VC_1582
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0753 family.
       0.430
VC_1575
Hypothetical protein; Identified by Glimmer2; putative.
       0.424
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.