STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1594Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (350 aa)    
Predicted Functional Partners:
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 0.999
VC_1596
Galactose-1-phosphate uridylyltransferase; Similar to SP:P09148 GB:X06226 PID:41524 PID:41531 GB:U00096; identified by sequence similarity; putative.
 
 
 0.987
VC_1690
Similar to GP:3237318; identified by sequence similarity; putative.
 
 
 0.929
VC_A0774
UDP-glucose 4-epimerase; Similar to SP:P09147 GB:V00278 GB:X06226 GB:X51449 PID:41523; identified by sequence similarity; putative; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.865
VC_0632
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Similar to GB:L42023 SP:P45161 PID:1007328 PID:1221461 PID:1205568; identified by sequence similarity; putative.
  
  
 0.564
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
      
 0.548
VC_A0597
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.539
ftsW
Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
      
 0.532
VC_0159
RNA-binding protein; Similar to GB:AE000511 PID:2313961; identified by sequence similarity; putative.
    
   0.531
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
      
 0.507
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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