STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1603Hypothetical protein; Identified by Glimmer2; putative. (258 aa)    
Predicted Functional Partners:
VC_1601
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.852
VC_1602
Chemotaxis protein CheV; Similar to SP:P37599 GB:U05345 GB:Z29584 PID:453378 PID:580837; identified by sequence similarity; putative.
   
 
 0.784
VC_1598
ABC transporter, periplasmic substrate-binding protein-related protein; Similar to GB:L42023 PID:1006358 PID:1221197 PID:1205330 SP:P45024; identified by sequence similarity; putative.
  
     0.763
VC_A0583
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.761
VC_A0981
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.755
VC_A0978
Amino acid ABC transporter, periplasmic amino acid-binding protein, putative; Similar to GB:J01805 SP:P02910 GB:V01372 GB:V01373 GB:X52093; identified by sequence similarity; putative.
  
   
 0.680
VC_A0980
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
  
 
   0.631
VC_1604
Response regulator; Similar to GB:AL009126; identified by sequence similarity; putative.
       0.599
VC_1605
Sensor kinase citA, putative; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
       0.599
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.