Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_1608Conserved hypothetical protein; Identified by Glimmer2; putative. (387 aa)    
Predicted Functional Partners:
VC_1607
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.973
VC_1606
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.961
VC_1609
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
0.918
VC_1659
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.807
VC_0589
ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative.
  
  
 0.712
VC_0715
NADPH-flavin oxidoreductase; Similar to GB:U08996 PID:478986; identified by sequence similarity; putative; Belongs to the flavin oxidoreductase frp family.
  
  
 0.544
VC_1048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.544
VC_A0637
Oxygen-insensitive NAD(P)H nitroreductase; Similar to GB:M63808 SP:Q01234 PID:148362; identified by sequence similarity; putative.
  
  
 0.544
VC_1074
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.536
VC_0165
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.489
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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