STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1609Conserved hypothetical protein; Identified by Glimmer2; putative. (408 aa)    
Predicted Functional Partners:
VC_1607
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.958
VC_1606
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.949
VC_1608
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
0.892
VC_0589
ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative.
  
 
 0.803
VC_0715
NADPH-flavin oxidoreductase; Similar to GB:U08996 PID:478986; identified by sequence similarity; putative; Belongs to the flavin oxidoreductase frp family.
  
  
 0.588
VC_1048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.588
VC_A0637
Oxygen-insensitive NAD(P)H nitroreductase; Similar to GB:M63808 SP:Q01234 PID:148362; identified by sequence similarity; putative.
  
  
 0.588
VC_1074
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.580
VC_1659
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.513
VC_0246
lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48388; identified by sequence similarity; putative.
    
  0.467
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.