Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_1610Hypothetical protein; Identified by Glimmer2; putative. (149 aa)    
Predicted Functional Partners:
VC_1612
Fimbrial biogenesis and twitching motility protein, putative; Similar to PID:1162960; identified by sequence similarity; putative.
 
     0.759
metAS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.755
VC_A0803
Serine protease, putative; Similar to PID:1336053; identified by sequence similarity; putative.
  
     0.602
VC_A0102
CbbY family protein; Similar to GB:U00096 PID:1789046; identified by sequence similarity; putative.
 
    0.567
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.563
VC_1649
Trypsin, putative; Similar to SP:P26262 PID:200359; identified by sequence similarity; putative.
  
     0.541
VC_0901
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.516
VC_1200
Trypsin, putative; Similar to SP:P51588; identified by sequence similarity; putative.
  
     0.505
VC_1377
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.491
VC_A1008
Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative.
  
     0.490
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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