Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1612Fimbrial biogenesis and twitching motility protein, putative; Similar to PID:1162960; identified by sequence similarity; putative. (237 aa)    
Predicted Functional Partners:
VC_0857
Fimbrial assembly protein PilE, putative; Similar to GB:U02552 PID:1246304 PID:435924; identified by sequence similarity; putative.
  
   
 0.783
VC_1610
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.759
VC_2630
Fimbrial assembly protein; Similar to GB:L13865 SP:P34750 PID:459551; identified by sequence similarity; putative.
  
   
 0.720
VC_2633
Fimbrial assembly protein PilN, putative; Similar to GB:U12892 PID:530857; identified by sequence similarity; putative.
  
   
 0.687
VC_2631
Fimbrial assembly protein PilP, putative; Similar to PID:1173874 PID:1914828; identified by sequence similarity; putative.
  
   
 0.675
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
   
 0.649
VC_0462
Twitching motility protein PilT; Similar to SP:P24559 GB:X67095 PID:151490; identified by sequence similarity; putative.
 
   
 0.641
VC_2632
Fimbrial assembly protein PilO, putative; Similar to GB:U12892 PID:530858; identified by sequence similarity; putative.
  
   
 0.625
VC_2634
Fimbrial assembly protein PilM, putative; Similar to GB:L28837 PID:895925; identified by sequence similarity; putative.
  
   
 0.601
VC_0998
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.599
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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