Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1622Outer membrane protein, putative; Similar to GB:M18975 SP:P13794 GB:M94078 PID:151409 PID:151508; identified by sequence similarity; putative. (212 aa)    
Predicted Functional Partners:
VC_0893
Chemotaxis protein PomB; Similar to PID:2130949; identified by sequence similarity; putative.
  
 0.936
VC_1763
Chemotaxis protein MotB-related protein; Similar to GB:AE000657; identified by sequence similarity; putative.
   
 0.925
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.881
VC_1621
Agglutination protein; Similar to GB:M64540 PID:150976; identified by sequence similarity; putative.
  
 
 0.870
VC_1882
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.800
VC_1884
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.763
VC_2213
Outer membrane protein OmpA; Similar to GP:2641145; identified by sequence similarity; putative; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
0.759
skp
Outer membrane protein OmpH; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm.
  
 
 0.737
VC_A0659
Protein F-related protein; Similar to PID:2062640; identified by sequence similarity; putative.
  
     0.735
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
 
 0.724
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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