Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1629Conserved hypothetical protein; Identified by Glimmer2; putative. (836 aa)    
Predicted Functional Partners:
VC_1630
ABC transporter, ATP-binding protein; Similar to GB:AE000782; identified by sequence similarity; putative.
 
 
 0.980
VC_1628
Conserved hypothetical protein; Identified by Glimmer2; putative.
     0.964
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.820
VC_2553
ABC transporter, ATP-binding protein, authentic frameshift; Identified by match to PFAM protein family HMM PF00005.
  
 
 0.820
VC_1568
ABC transporter, ATP-binding protein; Similar to GB:AL009126; identified by sequence similarity; putative.
  
 
 0.793
lolA
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity).
   
 
 0.789
VC_A0855
ABC transporter, ATP-binding protein; Similar to GB:AE000782; identified by sequence similarity; putative.
  
 
 0.788
VC_A0853
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.734
VC_1631
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.732
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.723
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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