STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1649Trypsin, putative; Similar to SP:P26262 PID:200359; identified by sequence similarity; putative. (548 aa)    
Predicted Functional Partners:
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.890
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.843
VC_1584
ankB protein; Similar to PID:563740 PID:1754534; identified by sequence similarity; putative.
    
 0.841
hscA
Chaperone protein HscA; Probable chaperone. Has a low intrinsic ATPase activity which is markedly stimulated by HscB (By similarity).
    
 
 0.707
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.707
VC_1373
DnaK-related protein; Similar to SP:O32482; identified by sequence similarity; putative.
    
 
 0.707
VC_1374
DnaK-related protein; Similar to SP:O32482; identified by sequence similarity; putative; Belongs to the heat shock protein 70 family.
    
 
 0.707
VC_1386
Heat shock protein 70 family protein; Similar to SP:P36928 GB:U00096 PID:1788384; identified by sequence similarity; putative.
    
 
 0.707
VC_A0269
Decarboxylase, group II; Similar to GB:L42023 PID:1161418 PID:1221055 PID:1205195 PID:1573971; identified by sequence similarity; putative.
 
 0.707
VC_1149
Glutamate decarboxylase, putative; Similar to SP:Q05683 PID:204226; identified by sequence similarity; putative.
 
 0.680
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.