STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vccCollagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family. (818 aa)    
Predicted Functional Partners:
VC_1952
Chitinase; Similar to GP:3851166; identified by sequence similarity; putative.
 
  
 0.930
VC_A0027
Chitinase; Similar to SP:P32823 PID:216207; identified by sequence similarity; putative.
 
  
 0.889
VC_A0065
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.842
VC_A0700
Chitodextrinase; Similar to GP:3928775; identified by sequence similarity; putative.
 
  
 0.833
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.815
VC_A0140
Spindolin-related protein; Similar to PID:1145625; identified by sequence similarity; putative.
 
  
 0.801
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
 
  
  0.797
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.782
VC_1565
Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.
  
 
 
 0.778
VC_1250
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.776
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.