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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1662Conserved hypothetical protein; Identified by Glimmer2; putative. (88 aa)    
Predicted Functional Partners:
VC_1255
Ribonucleoside-diphosphate reductase, beta subunit; Similar to GB:K02672 SP:P00453 PID:146967 GB:U00096 PID:1788567; identified by sequence similarity; putative.
  
     0.661
VC_1254
Iron-sulfur cluster-binding protein, putative; Similar to GB:L42023 SP:P45154 PID:1007287 PID:1221440 PID:1205547; identified by sequence similarity; putative.
  
     0.632
VC_1256
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
     0.626
VC_1663
Heat shock protein HslJ; Similar to SP:P52644 GB:U00096 PID:1742252 PID:1742258 PID:1787644; identified by sequence similarity; putative.
       0.581
VC_A1021
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
VC_1099
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
VC_1433
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
VC_2476
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0149 family.
  
     0.455
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.441
ompV
Outer membrane protein OmpV; Similar to SP:P06111 PID:48372; identified by sequence similarity; putative.
  
     0.424
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.