Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1663Heat shock protein HslJ; Similar to SP:P52644 GB:U00096 PID:1742252 PID:1742258 PID:1787644; identified by sequence similarity; putative. (147 aa)    
Predicted Functional Partners:
VC_1662
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.739
VC_1664
ABC transporter, periplasmic substrate-binding protein, putative; Similar to GB:U00096 PID:1788051; identified by sequence similarity; putative.
 
     0.739
VC_1667
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.733
VC_1665
ABC transporter, permease protein, putative; Similar to GB:U00096 PID:1742865 PID:1788052; identified by sequence similarity; putative.
       0.692
VC_1666
ABC transporter, ATP-binding protein, putative; Similar to GB:U00096 PID:1742866 PID:1788053; identified by sequence similarity; putative.
       0.692
VC_1566
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.642
VC_1567
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.642
VC_1409
Multidrug resistance protein, putative; Similar to GP:3378279; identified by sequence similarity; putative.
    
   0.615
VC_1565
Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.
    
   0.615
VC_1606
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.615
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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