STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1665ABC transporter, permease protein, putative; Similar to GB:U00096 PID:1742865 PID:1788052; identified by sequence similarity; putative. (566 aa)    
Predicted Functional Partners:
VC_1664
ABC transporter, periplasmic substrate-binding protein, putative; Similar to GB:U00096 PID:1788051; identified by sequence similarity; putative.
 
 
 0.973
VC_1667
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.952
VC_1666
ABC transporter, ATP-binding protein, putative; Similar to GB:U00096 PID:1742866 PID:1788053; identified by sequence similarity; putative.
 
  
 0.935
VC_1723
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.594
VC_A0032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.498
VC_1663
Heat shock protein HslJ; Similar to SP:P52644 GB:U00096 PID:1742252 PID:1742258 PID:1787644; identified by sequence similarity; putative.
       0.493
VC_1933
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.466
VC_A0075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.443
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.