STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1666ABC transporter, ATP-binding protein, putative; Similar to GB:U00096 PID:1742866 PID:1788053; identified by sequence similarity; putative. (220 aa)    
Predicted Functional Partners:
VC_1665
ABC transporter, permease protein, putative; Similar to GB:U00096 PID:1742865 PID:1788052; identified by sequence similarity; putative.
 
  
 0.952
VC_1664
ABC transporter, periplasmic substrate-binding protein, putative; Similar to GB:U00096 PID:1788051; identified by sequence similarity; putative.
 
   
 0.946
VC_1667
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.940
malK
Maltose/maltodextrin ABC transporter, ATP-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family.
  
  
 
0.913
malF
Maltose ABC transporter, permease protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Probably responsible for the translocation of the substrate across the membrane.
     
  0.900
VC_1663
Heat shock protein HslJ; Similar to SP:P52644 GB:U00096 PID:1742252 PID:1742258 PID:1787644; identified by sequence similarity; putative.
       0.692
VC_A0725
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.685
VC_1525
ABC transporter, ATP-binding protein; Similar to GB:AE000782; identified by sequence similarity; putative.
  
  
 
0.663
btuD
Vitamin B12 ABC transporter, ATP-binding protein BtuD, putative; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.
  
  
 
0.657
ugpC
Glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
  
  
 
0.613
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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