STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1679Psp operon transcriptional activator; Similar to SP:P37344 PID:1209663 GB:U00096 PID:1742133 PID:1742142; identified by sequence similarity; putative. (338 aa)    
Predicted Functional Partners:
VC_2529
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 
 0.971
VC_1678
Phage shock protein A; Similar to SP:P23853 GB:X57560 PID:42539 GB:U00096 PID:1742134; identified by sequence similarity; putative.
 
 
 
 0.958
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.804
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.804
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.804
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
    
   0.804
VC_1676
Phage shock protein C; Similar to SP:P23855 GB:X57560 PID:42541 GB:U00096 PID:1742136; identified by sequence similarity; putative.
 
   
 0.762
VC_1677
Phage shock protein B; Similar to SP:P23854 GB:X57560 PID:42540 GB:U00096 PID:1742135; identified by sequence similarity; putative.
 
   
 0.702
VC_1682
Peptide ABC transporter, permease protein; Similar to SP:P36669 GB:X74212 PID:414210; identified by sequence similarity; putative.
       0.536
VC_1683
Peptide ABC transporter, ATP-binding protein; Similar to SP:P36635 GB:U08190 PID:470682 GB:U00096 PID:1279403; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.536
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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