Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1681Peptide ABC transporter, permease protein; Similar to GB:U00096 SP:Q47623 PID:1279401 PID:1742106 PID:1742115; identified by sequence similarity; putative. (320 aa)    
Predicted Functional Partners:
VC_1683
Peptide ABC transporter, ATP-binding protein; Similar to SP:P36635 GB:U08190 PID:470682 GB:U00096 PID:1279403; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 
 0.997
VC_1682
Peptide ABC transporter, permease protein; Similar to SP:P36669 GB:X74212 PID:414210; identified by sequence similarity; putative.
 
  
 0.987
VC_1684
Peptide ABC transporter, ATP-binding protein; Similar to SP:P36637 GB:U08190 PID:470683 GB:U00096 PID:1279404; identified by sequence similarity; putative.
 
  
 0.974
VC_1680
Peptide ABC transporter, periplasmic peptide-binding protein; Similar to SP:P36634 GB:X52093 GB:X74212 PID:414208; identified by sequence similarity; putative.
 
   
 0.971
VC_1685
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_A1100
ABC transporter, permease protein; Similar to SP:P37315 PID:349227 PID:466681 GB:U00096 PID:1789964; identified by sequence similarity; putative.
  
     0.771
VC_1093
Oligopeptide ABC transporter, permease protein; Similar to GB:U00096 SP:P77664 PID:1742034 PID:1787498 PID:1805526; identified by sequence similarity; putative.
  
     0.770
VC_0618
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
  
     0.767
VC_1094
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P76027 PID:1742035 PID:1787499 PID:1805527; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
     0.767
VC_0173
Peptide ABC transporter, permease protein; Similar to SP:P37315 PID:349227 PID:466681 GB:U00096 PID:1789964; identified by sequence similarity; putative.
  
     0.761
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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