STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1684Peptide ABC transporter, ATP-binding protein; Similar to SP:P36637 GB:U08190 PID:470683 GB:U00096 PID:1279404; identified by sequence similarity; putative. (262 aa)    
Predicted Functional Partners:
VC_1682
Peptide ABC transporter, permease protein; Similar to SP:P36669 GB:X74212 PID:414210; identified by sequence similarity; putative.
 
 0.991
VC_1681
Peptide ABC transporter, permease protein; Similar to GB:U00096 SP:Q47623 PID:1279401 PID:1742106 PID:1742115; identified by sequence similarity; putative.
 
  
 0.961
VC_1683
Peptide ABC transporter, ATP-binding protein; Similar to SP:P36635 GB:U08190 PID:470682 GB:U00096 PID:1279403; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
  
0.942
VC_0173
Peptide ABC transporter, permease protein; Similar to SP:P37315 PID:349227 PID:466681 GB:U00096 PID:1789964; identified by sequence similarity; putative.
 
     0.928
VC_1680
Peptide ABC transporter, periplasmic peptide-binding protein; Similar to SP:P36634 GB:X52093 GB:X74212 PID:414208; identified by sequence similarity; putative.
 
   
 0.923
VC_1093
Oligopeptide ABC transporter, permease protein; Similar to GB:U00096 SP:P77664 PID:1742034 PID:1787498 PID:1805526; identified by sequence similarity; putative.
 
     0.901
VC_0618
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.867
VC_1685
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_0619
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.764
VC_A1099
ABC transporter, permease protein; Similar to SP:P33591 GB:X73143 PID:404846 PID:466613 GB:U00096; identified by sequence similarity; putative.
 
     0.759
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.