STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1686Hypothetical protein; Identified by Glimmer2; putative. (184 aa)    
Predicted Functional Partners:
VC_1687
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_A0800
creA protein; Similar to SP:P08367 GB:M13608 PID:147249 PID:147691 PID:537237; identified by sequence similarity; putative.
  
     0.560
VC_1688
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
VC_1070
Phosphatase, putative; Similar to PID:2224838; identified by sequence similarity; putative.
  
    0.545
VC_1531
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.539
epsN
General secretion pathway protein N; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane.
  
     0.539
VC_2444
General secretion pathway protein B, putative; Similar to GB:X81473 SP:P45755 PID:551217; identified by sequence similarity; putative.
  
     0.502
VC_0115
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.489
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
VC_1044
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.