STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1688Hypothetical protein; Identified by Glimmer2; putative. (415 aa)    
Predicted Functional Partners:
VC_1687
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.581
VC_1686
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.541
ompV
Outer membrane protein OmpV; Similar to SP:P06111 PID:48372; identified by sequence similarity; putative.
  
     0.535
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.490
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.485
vcc
Collagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family.
  
     0.467
VC_2563
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.458
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.454
VC_0381
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.452
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.