STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1689Hypothetical protein; Identified by Glimmer2; putative. (186 aa)    
Predicted Functional Partners:
VC_1690
Similar to GP:3237318; identified by sequence similarity; putative.
      0.949
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.587
VC_A0655
Sucrose-6-phosphate dehydrogenase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
    
 0.587
VC_1558
6-phospho-beta-glucosidase; Similar to PID:887851 GB:U00096 SP:Q46829 PID:2367174; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 1 family.
    
 0.569
VC_1284
6-phospho-beta-glucosidase; Similar to SP:P46320 PID:895751 PID:1783269 GB:AL009126; identified by sequence similarity; putative.
    
 0.540
VC_1594
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
    
  0.529
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Plays a role in beta-lactam antibiotic resistance via its role in generating anhydro-N-acetylmuramic acid-linked peptides; these peptides function as signaling molecules that induce high-level expression of the beta-lactamase AmpC.
     
 0.525
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
    
  0.509
VC_0911
Trehalose-6-phosphate hydrolase; Similar to SP:P39795 PID:580942 PID:1000452 GB:AL009126; identified by sequence similarity; putative.
  
 
 0.481
VC_A0860
Alpha-amylase; Similar to SP:P25718 GB:X58994 PID:41966 PID:466709 GB:U00096; identified by sequence similarity; putative.
  
 
 0.481
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.