Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
VC_1696DNA-binding protein inhibitor Id-2-related protein; Similar to SP:P41136 PID:1030074; identified by sequence similarity; putative. (126 aa)    
Predicted Functional Partners:
VC_1697
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.737
VC_1698
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.737
VC_A0314
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
VC_A1106
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.601
VC_0885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.598
rlmG
Conserved hypothetical protein; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
  
     0.556
VC_2332
Acetyltransferase, GNAT family; Similar to GB:Pyro_h; identified by sequence similarity; putative.
  
    0.536
VC_1541
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.535
VC_1695
Formate transporter 1, putative; Similar to SP:P21501 PID:147154 GB:U00096 PID:1651428 PID:1651435; identified by sequence similarity; putative.
       0.531
VC_A0426
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.527
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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