STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1703Conserved hypothetical protein; Identified by Glimmer2; putative. (163 aa)    
Predicted Functional Partners:
VC_0402
MSHA biogenesis protein MshL; Similar to PID:791156; identified by sequence similarity; putative.
    
   0.819
tcpC
Toxin co-regulated pilus biosynthesis outer membrane protein C; Involved in TCP pilus biogenesis.
    
   0.819
VC_1702
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_1701
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.614
acfD
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.564
VC_1700
Intracellular sepatation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.445
VC_0769
Chitinase, putative; Similar to SP:P08252 PID:19861 PID:19863 PID:512387; identified by sequence similarity; putative.
   
  
 0.413
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.413
VC_1952
Chitinase; Similar to GP:3851166; identified by sequence similarity; putative.
   
  
 0.413
VC_A0027
Chitinase; Similar to SP:P32823 PID:216207; identified by sequence similarity; putative.
   
  
 0.413
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.