STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1743Hypothetical protein; Identified by Glimmer2; putative. (341 aa)    
Predicted Functional Partners:
VC_1742
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.868
VC_1744
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.768
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
     
 0.766
VC_1741
Transcriptional regulator, TetR family; Similar to GB:D28504 PID:551300; identified by sequence similarity; putative.
     
 0.635
exbD1
TonB system transport protein ExbD1; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
  
     0.621
VC_1977
Aspartate aminotransferase, putative; Similar to GB:U00096 PID:1788627 PID:1799660; identified by sequence similarity; putative.
     
 0.613
VC_A0620
Thiosulfate sulfurtransferase SseA, putative; Similar to SP:P31142 GB:U00096 PID:1788869 PID:1799924; identified by sequence similarity; putative.
    
  0.611
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.596
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.583
VC_1671
Cystathionine beta-lyase; Similar to GB:M12858 SP:P06721 PID:146824 PID:882537 PID:1789383; identified by sequence similarity; putative.
     
 0.515
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.